Topology And Physics Of Circular Dnafrom The Series

Topology and Physics of Circular DNA presents comprehensive coverage of the physical properties of circular DNA. The author examines how topological constraints arising from cyclization of DNA lead to distinctive properties that make closed molecules radically different from linear DNA. The phenomenon of supercoiling, its geometric and topological analysis, and the formation of noncanonical structures in circular DNA under the influence of supercoiling are emphasized. The combination of consistent theoretical analysis and detailed treatment of major experimental approaches make Topology and Physics of Circular DNA an important reference volume for biophysicists, biochemists, molecular biologists, and researchers and students who want to expand their understanding of circular DNA.

"A key aspect of DNA is its ability to form a variety of structures, this book explains the origins and importance of such structures"--Provided by publisher.

The properties of knotted and linked configurations in space have long been of interest to physicists and mathematicians. More recently and more widely, they have become important to biologists, chemists, computer scientists, and engineers. The depth and breadth of their applications are widely appreciated. Nevertheless, fundamental and challenging questions remain to be answered. Based on a Special Session at the AMS Sectional Meeting in Las Vegas (NV) in April 2001, this volumediscusses critical questions and introduces new ideas that will stimulate multi-disciplinary applications. Some of the papers are primarily theoretical; others are experimental. Some are purely mathematical; others deal with applications of mathematics to theoretical computer science, engineering,physics, biology, or chemistry. Connections are made between classical knot theory and the physical world of macromolecules, such as DNA, geometric linkages, rope, and even cooked spaghetti. This book introduces the world of physical knot theory in all its manifestations and points the way for new research. It is suitable for a diverse audience of mathematicians, computer scientists, engineers, biologists, chemists, and physicists.

This volume focuses on the interactions between mathematics, physics, biology and neuroscience by exploring new geometrical and topological modelling in these fields. Among the highlights are the central roles played by multilevel and scale-change approaches in these disciplines. The integration of mathematics with physics, as well as molecular and cell biology and the neurosciences, will constitute the new frontier of 21st century science, where breakthroughs are more likely to span across traditional disciplines.

Louis Kauffman discusses applications of knot theory to physics, Nadrian Seeman discusses how topology is used in DNA nanotechnology, and Jonathan Simon discusses the statistical and energetic properties of knots and their relation to molecular biology."--BOOK JACKET.

Although contact geometry and topology is briefly discussed in V I Arnol'd's book “Mathematical Methods of Classical Mechanics ”(Springer-Verlag, 1989, 2nd edition), it still remains a domain of research in pure mathematics, e.g. see the recent monograph by H Geiges “An Introduction to Contact Topology” (Cambridge U Press, 2008). Some attempts to use contact geometry in physics were made in the monograph “Contact Geometry and Nonlinear Differential Equations” (Cambridge U Press, 2007). Unfortunately, even the excellent style of this monograph is not sufficient to attract the attention of the physics community to this type of problems. This book is the first serious attempt to change the existing status quo. In it we demonstrate that, in fact, all branches of theoretical physics can be rewritten in the language of contact geometry and topology: from mechanics, thermodynamics and electrodynamics to optics, gauge fields and gravity; from physics of liquid crystals to quantum mechanics and quantum computers, etc. The book is written in the style of famous Landau-Lifshitz (L-L) multivolume course in theoretical physics. This means that its readers are expected to have solid background in theoretical physics (at least at the level of the L-L course). No prior knowledge of specialized mathematics is required. All needed new mathematics is given in the context of discussed physical problems. As in the L-L course some problems/exercises are formulated along the way and, again as in the L-L course, these are always supplemented by either solutions or by hints (with exact references). Unlike the L-L course, though, some definitions, theorems, and remarks are also presented. This is done with the purpose of stimulating the interest of our readers in deeper study of subject matters discussed in the text.

“… Giant molecules are important in our everyday life. But, as pointed out by the authors, they are also associated with a culture. What Bach did with the harpsichord, Kuhn and Flory did with polymers. We owe a lot of thanks to those who now make this music accessible …”Pierre-Gilles de Gennes Nobel Prize laureate in Physics (Foreword for the 1st Edition, March 1996)This book describes the basic facts, concepts and ideas of polymer physics in simple, yet scientifically accurate, terms. In both scientific and historic contexts, the book shows how the subject of polymers is fascinating, as it is behind most of the wonders of living cell machinery as well as most of the newly developed materials. No mathematics is used in the book beyond modest high school algebra and a bit of freshman calculus, yet very sophisticated concepts are introduced and explained, ranging from scaling and reptations to protein folding and evolution. The new edition includes an extended section on polymer preparation methods, discusses knots formed by molecular filaments, and presents new and updated materials on such contemporary topics as single molecule experiments with DNA or polymer properties of proteins and their roles in biological evolution.

Providing a course of modern topology intended for biologists and physicists, this book presents a class of results in molecular biology for which topological methods and ideas are important. These include: the large-scale conformation properties of DNA; computational methods; the structure of proteins; and other problems in molecular biology.

Very broad overview of the field intended for an interdisciplinary audience; Lively discussion of current challenges written in a colloquial style; Author is a rising star in this discipline; Suitably accessible for beginners and suitably rigorous for experts; Features extensive four-color illustrations; Appendices featuring homework assignments and reading lists complement the material in the main text