Vibrational and Theoretical Investigations of Molecular Conformations and Intramolecular Pi-type Hydrogen Bonding

Vibrational and Theoretical Investigations of Molecular Conformations and Intramolecular Pi-type Hydrogen Bonding
Author: Esther Ocola
Publisher:
Total Pages:
Release: 2012
Genre:
ISBN:


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The molecular conformations, potential energy functions and vibrational spectra of several cyclic molecules have been investigated by ab initio and density functional theory calculations and by infrared and Raman spectroscopy. The ab initio computations of 3-cyclopenten-1-ol predict that its lowest energy conformer has a weak pi-type intramolecular hydrogen bonding. The three other conformers lie 301 to 411 cm^-1 higher in energy. The infrared and Raman spectra of this molecule confirm the presence of the four conformers. The energy difference between the two conformers of lowest energy was also determined from the experimental spectroscopic data and was found to be 435 plus/minus 160 cm^-1, in reasonable agreement with the ab initio computations results. Ab initio calculations for cyclopentane and d1, 1,1-d2, 1,1,2,2,3,3-d6, and d10 isotopomers confirm cyclopentane confirmed that has twist and bent structures and that these differ in energy by less than 10 cm^-1. The bending angle is 41.5 degrees and the twisting angle is 43.2 degrees. A complete vibrational assignment for each of the isotopomers was achieved. Ab initio calculations were also carried out for methylcyclopropane, cyclopropylsilane, cylopropylgermane, cyclopropylamine, cyclopropanethiol and cyclopropanol. The structure and the potential energy function for internal rotation was calculated for each and compared to available experimental results determined from infrared and Raman spectra. The calculated barriers to internal rotation agree very well with the experimental data. The structures, relative energies, and frequencies for the lowest energy vibrations of the twisted, bent, and planar forms of cyclohexene and four of its oxygen analogs were calculated and compared to experimental results. The calculated structural data agree very well with that from the microwave work, but the computed barriers are somewhat lower than those based on far-infrared data. 4-Silaspiro-(3,3)-heptane possesses two four-membered rings, each puckered with and angle of 34 degrees. The molecule possesses a two-dimensional ring-puckering potential energy surface with four equivalent minima. The ab initio calculations predict a barrier to planarity of each ring of 582 cm^-1 while the energy of the structure with both rings planar is 1220 cm^-1 higher. The calculated infrared and Raman spectra were compared to those previously published, and the agreement is excellent.

Master's Theses Directories

Master's Theses Directories
Author:
Publisher:
Total Pages: 488
Release: 1997
Genre: Dissertations, Academic
ISBN:


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"Education, arts and social sciences, natural and technical sciences in the United States and Canada".

Conformational and Structural Analyses of Some Alcohols and Amines of Molecules with Low Frequency Large Amplitude Anharmonic Vibrations

Conformational and Structural Analyses of Some Alcohols and Amines of Molecules with Low Frequency Large Amplitude Anharmonic Vibrations
Author: Arindam Ganguly
Publisher:
Total Pages: 876
Release: 2010
Genre: Conformational analysis
ISBN:


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The infrared and Raman spectra of compounds with hydroxyl and amino functional groups, as well as some with cyclic skeletal structures have been recorded of the gas and in condensed phases. Temperature dependent infrared spectra in xenon and krypton solutions were also recorded. A complete vibrational assignment, conformational stability determination and adjusted r0 parameters have been obtained for each of the most stable conformers and in some cases for lesser stable conformers. The results of these investigations were supported by ab initio predicted infrared intensities and depolarization ratios, band contours an conformational stabilities. Normal coordinate calculations were carried out for all of the molecules. From these calculations potential energy distributions for all the fundamentals were predicted for each molecules from which approximate descriptions of the vibrations were ascertained. Cyclobutanes substituted with asymmetric rotor such as hydroxyl and amine groups have four possible conformers. In case of cyclobutanol two of the four possible stable conformers have been confidently identified and their order of stabilities has been experimentally determined whereas three out of the four conformers were experimentally determined for cyclobutylamine. For halogen substituted cyclobutanes only two possible determined for cyclobutylamine. For halogen substituted cyclobutanes only two possible conformers exist and the enthalpy difference between the more stable equatorial conformer and the axial form has been determined for fluoro-, chloro-, and bromocyclobutane. For fluorocyclopentane only a single twist conformer was found which is at a variance to previously reported structures of both envelope-equatorial and envelope-axial conformers or only a single envelope-equatorial conformer. Thus, fluorocyclopentane provides a unique example of pseudorotation for five member rings. However for cyanocyclopentane both the equatorial and axial forms were observed. The conformational stabilities, adjusted R0 structural parameters and other scientific information are discussed and compared to the corresponding properties of some similar molecules based upon their functional groups and molecular structure.

Discovering Chemistry With Natural Bond Orbitals

Discovering Chemistry With Natural Bond Orbitals
Author: Frank Weinhold
Publisher: John Wiley & Sons
Total Pages: 342
Release: 2012-06-15
Genre: Science
ISBN: 1118229193


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This book explores chemical bonds, their intrinsic energies, and the corresponding dissociation energies which are relevant in reactivity problems. It offers the first book on conceptual quantum chemistry, a key area for understanding chemical principles and predicting chemical properties. It presents NBO mathematical algorithms embedded in a well-tested and widely used computer program (currently, NBO 5.9). While encouraging a "look under the hood" (Appendix A), this book mainly enables students to gain proficiency in using the NBO program to re-express complex wavefunctions in terms of intuitive chemical concepts and orbital imagery.

The Structure of Small Molecules and Ions

The Structure of Small Molecules and Ions
Author: Ron Naaman
Publisher: Springer Science & Business Media
Total Pages: 338
Release: 2012-12-06
Genre: Technology & Engineering
ISBN: 1468474243


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The workshop on "The structure of small molecules and ions" was held at the Neve-Han guest house, near Jerusalem, Israel on December 13 to 18 in mem ory of the late Professor Itzhak Plesser. Professor Plesser played a central role in the research done both at the Weizmann Institute and at Argonne National Laboratories on the "Coulomb explosion" method. His friends honored his memory by organizing a meeting in which subjects related to Plesser's interests would be discussed. Just a week be fore the conference started we were struck by another tragedy -the death of our graduate student Ms. Hana Kovner, who participated in many of the Coulomb explosion experiments at the Weizmann Institute. We would like to dedicate these proceedings to her memory as well. The goal of the workshop was to bring together chemists and physicists working on different aspects of the structural problems of small molecular en tities. The time seemed appropriate for discussing experimental and theoretical concepts, since in recent years new methods have been introduced, and a large amount of information has been accumulated on systems not studied before, like unstable molecules, ions, van der Waals molecules and clusters. The program of the workshop reflects, we believe, these new developments. The meeting was characterized by intensive discussions in which the weak nesses and strengths of new and of well established concepts were revealed. We hope that it measured up to the high standards Itzhak Plesser maintained all through his scientific life.