Beginners Guide To Spatial Temporal And Spatial Temporal Ecological Data Analysis With R Inla Gam And Zero Inflated Models

This book discusses advanced statistical methods that can be used to analyse ecological data. Most environmental collected data are measured repeatedly over time, or space and this requires the use of GLMM or GAMM methods. The book starts by revising regression, additive modelling, GAM and GLM, and then discusses dealing with spatial or temporal dependencies and nested data.

An overview of the wide range of spatial statistics available to analyse ecological data.

This book provides a practical introduction to analyzing ecological data using real data sets. The first part gives a largely non-mathematical introduction to data exploration, univariate methods (including GAM and mixed modeling techniques), multivariate analysis, time series analysis, and spatial statistics. The second part provides 17 case studies. The case studies include topics ranging from terrestrial ecology to marine biology and can be used as a template for a reader’s own data analysis. Data from all case studies are available from www.highstat.com. Guidance on software is provided in the book.

Ecological dynamics are tremendously complicated and are studied at a variety of spatial and temporal scales. Ecologists often simplify analysis by describing changes in density of individuals across a landscape, and statistical methods are advancing rapidly for studying spatio-temporal dynamics. However, spatio-temporal statistics is often presented using a set of principles that may seem very distant from ecological theory or practice. This book seeks to introduce a minimal set of principles and numerical techniques for spatio-temporal statistics that can be used to implement a wide range of real-world ecological analyses regarding animal movement, population dynamics, community composition, causal attribution, and spatial dynamics. We provide a step-by-step illustration of techniques that combine core spatial-analysis packages in R with low-level computation using Template Model Builder. Techniques are showcased using real-world data from varied ecological systems, providing a toolset for hierarchical modelling of spatio-temporal processes. Spatio-Temporal Models for Ecologists is meant for graduate level students, alongside applied and academic ecologists. Key Features: Foundational ecological principles and analyses Thoughtful and thorough ecological examples Analyses conducted using a minimal toolbox and fast computation Code using R and TMB included in the book and available online

The Handbook is written for academics, researchers, practitioners and advanced graduate students. It has been designed to be read by those new or starting out in the field of spatial analysis as well as by those who are already familiar with the field. The chapters have been written in such a way that readers who are new to the field will gain important overview and insight. At the same time, those readers who are already practitioners in the field will gain through the advanced and/or updated tools and new materials and state-of-the-art developments included. This volume provides an accounting of the diversity of current and emergent approaches, not available elsewhere despite the many excellent journals and te- books that exist. Most of the chapters are original, some few are reprints from the Journal of Geographical Systems, Geographical Analysis, The Review of Regional Studies and Letters of Spatial and Resource Sciences. We let our contributors - velop, from their particular perspective and insights, their own strategies for m- ping the part of terrain for which they were responsible. As the chapters were submitted, we became the first consumers of the project we had initiated. We gained from depth, breadth and distinctiveness of our contributors’ insights and, in particular, the presence of links between them.

Introduction to Environmental Data Science focuses on data science methods in the R language applied to environmental research, with sections on exploratory data analysis in R including data abstraction, transformation, and visualization; spatial data analysis in vector and raster models; statistics and modelling ranging from exploratory to modelling, considering confirmatory statistics and extending to machine learning models; time series analysis, focusing especially on carbon and micrometeorological flux; and communication. Introduction to Environmental Data Science is an ideal textbook to teach undergraduate to graduate level students in environmental science, environmental studies, geography, earth science, and biology, but can also serve as a reference for environmental professionals working in consulting, NGOs, and government agencies at the local, state, federal, and international levels. Features • Gives thorough consideration of the needs for environmental research in both spatial and temporal domains. • Features examples of applications involving field-collected data ranging from individual observations to data logging. • Includes examples also of applications involving government and NGO sources, ranging from satellite imagery to environmental data collected by regulators such as EPA. • Contains class-tested exercises in all chapters other than case studies. Solutions manual available for instructors. • All examples and exercises make use of a GitHub package for functions and especially data.

Statistical Methods for Spatial and Spatio-Temporal Data Analysis provides a complete range of spatio-temporal covariance functions and discusses ways of constructing them. This book is a unified approach to modeling spatial and spatio-temporal data together with significant developments in statistical methodology with applications in R. This book includes: Methods for selecting valid covariance functions from the empirical counterparts that overcome the existing limitations of the traditional methods. The most innovative developments in the different steps of the kriging process. An up-to-date account of strategies for dealing with data evolving in space and time. An accompanying website featuring R code and examples