Algorithms Esa 2013

This book constitutes the refereed proceedings of the 21st Annual European Symposium on Algorithms, ESA 2013, held in Sophia Antipolis, France, in September 2013 in the context of the combined conference ALGO 2013. The 69 revised full papers presented were carefully reviewed and selected from 303 initial submissions: 53 out of 229 in track "Design and Analysis" and 16 out of 74 in track "Engineering and Applications". The papers in this book present original research in all areas of algorithmic research, including but not limited to: algorithm engineering; algorithmic aspects of networks; algorithmic game theory; approximation algorithms; computational biology; computational finance; computational geometry; combinatorial optimization; data compression; data structures; databases and information retrieval; distributed and parallel computing; graph algorithms; hierarchical memories; heuristics and meta-heuristics; mathematical programming; mobile computing; on-line algorithms; parameterized complexity; pattern matching; quantum computing; randomized algorithms; scheduling and resource allocation problems; streaming algorithms.

This book constitutes the refereed proceedings of the 22st Annual European Symposium on Algorithms, ESA 2014, held in Wrocław, Poland, in September 2014, as part of ALGO 2014. The 69 revised full papers presented were carefully reviewed and selected from 269 initial submissions: 57 out of 221 in Track A, Design and Analysis, and 12 out of 48 in Track B, Engineering and Applications. The papers present original research in the areas of design and mathematical analysis of algorithms; engineering, experimental analysis, and real-world applications of algorithms and data structures.

This book constitutes the refereed proceedings of the 23rd Annual European Symposium on Algorithms, ESA 2015, held in Patras, Greece, in September 2015, as part of ALGO 2015. The 86 revised full papers presented together with two invited lectures were carefully reviewed and selected from 320 initial submissions: 71 out of 261 in Track A, Design and Analysis, and 15 out of 59 in Track B, Engineering and Applications. The papers present real-world applications, engineering, and experimental analysis of algorithms.

This book constitutes the refereed proceedings of the 15th Algorithms and Data Structures Symposium, WADS 2017, held in St. John's, NL, Canada, in July/August 2017. The 49 full papers presented together with 3 abstracts of invited talks were carefully reviewed and selected from 109 submissions. They present original research on the theory and application of algorithms and data structures in many areas, including combinatorics, computational geometry, databases, graphics, and parallel and distributed computing. The WADS Symposium, which alternates with the Scandinavian Symposium and Workshops on Algorithm Theory, SWAT, is intended as a forum for researchers in the area of design and analysis of algorithms and data structures. Papers presenting original research on the theory and application of algorithms and data structures

Guided by standard bioscience workflows in high-throughput sequencing analysis, this book for graduate students, researchers, and professionals in bioinformatics and computer science offers a unified presentation of genome-scale algorithms. This new edition covers the use of minimizers and other advanced data structures in pangenomics approaches.

This Festschrift was published in honor of Hans L. Bodlaender on the occasion of his 60th birthday. The 14 full and 5 short contributions included in this volume show the many transformative discoveries made by H.L. Bodlaender in the areas of graph algorithms, parameterized complexity, kernelization and combinatorial games. The papers are written by his former Ph.D. students and colleagues as well as by his former Ph.D. advisor, Jan van Leeuwen. Chapter “Crossing Paths with Hans Bodlaender: A Personal View on Cross-Composition for Sparsification Lower Bounds” is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

This book constitutes the refereed proceedings of the 14th International Conference on Algorithms and Computation, WALCOM 2020, held in Singapore in March/April 2020. The 23 full and 4 short papers presented were carefully reviewed and selected from 66 submissions. The papers focus on algorithmic graph theory and combinatorics, computational biology, computational geometry, data structures, experimental algorithm methodologies, graph algorithms, graph drawing, parallel and distributed algorithms, network optimization.

Data compression is mandatory to manage massive datasets, indexing is fundamental to query them. However, their goals appear as counterposed: the former aims at minimizing data redundancies, whereas the latter augments the dataset with auxiliary information to speed up the query resolution. In this monograph we introduce solutions that overcome this dichotomy. We start by presenting the use of optimization techniques to improve the compression of classical data compression algorithms, then we move to the design of compressed data structures providing fast random access or efficient pattern matching queries on the compressed dataset. These theoretical studies are supported by experimental evidences of their impact in practical scenarios.

A hands-on approach to tasks and techniques in data stream mining and real-time analytics, with examples in MOA, a popular freely available open-source software framework. Today many information sources—including sensor networks, financial markets, social networks, and healthcare monitoring—are so-called data streams, arriving sequentially and at high speed. Analysis must take place in real time, with partial data and without the capacity to store the entire data set. This book presents algorithms and techniques used in data stream mining and real-time analytics. Taking a hands-on approach, the book demonstrates the techniques using MOA (Massive Online Analysis), a popular, freely available open-source software framework, allowing readers to try out the techniques after reading the explanations. The book first offers a brief introduction to the topic, covering big data mining, basic methodologies for mining data streams, and a simple example of MOA. More detailed discussions follow, with chapters on sketching techniques, change, classification, ensemble methods, regression, clustering, and frequent pattern mining. Most of these chapters include exercises, an MOA-based lab session, or both. Finally, the book discusses the MOA software, covering the MOA graphical user interface, the command line, use of its API, and the development of new methods within MOA. The book will be an essential reference for readers who want to use data stream mining as a tool, researchers in innovation or data stream mining, and programmers who want to create new algorithms for MOA.

This book constitutes the refereed proceedings of the 13th International Workshop on Algorithms in Bioinformatics, WABI 2013, held in Sophia Antipolis, France, in September 2013. WABI 2013 is one of seven workshops which, along with the European Symposium on Algorithms (ESA), constitute the ALGO annual meeting and highlights research in algorithmic work for bioinformatics, computational biology and systems biology. The goal is to present recent research results, including significant work-in-progress, and to identify and explore directions of future research. The 27 full papers presented were carefully reviewed and selected from 61 submissions. The papers cover all aspects of algorithms in bioinformatics, computational biology and systems biology.